Organic Chemistry 354 Open Book Quiz - December 2, 1999

Dr. Sundin

1. The antibiotic Syringomycin contains a nonapeptide. In addition to the common amino acids, it also contains derivatives, Dab and Dhb, of a-aminobutyric acid. Determine its amino acid sequence based on the analytical data below.

Complete hydrolysis: Arg = 1; Asp = 1; Dab = 2; Dhb = 1; Phe= 1; Ser = 2; Thr = 1.

Edman degradation gave Ser. Carboxypeptidase A gave Thr. Partial hydrolysis gave a complex mixture from which only four tripeptides (see below) were isolated in high enough yield and purity to be characterized. They are:

    Arg-Phe-Dhb

    Dab-Arg-Phe

    Dhb-Asp-Thr

    Ser-Dab-Dab

Answer

2. In solution at a pH of 5.97, Glycine (Gly) has a net charge of zero. However, at a pH of 2 Gly has a net charge of +1 while at a pH of 11 Gly has a net charge of -1.

a. Give the detailed structure of the predominant species at each pH value. Answer

b. Peptides also exhibit different net charges at different pH’s. For each of the following tripeptides, determine the net charge (it will be either +3, +2, +1, 0, -1, -2, or -3) at pH’s of 2 and 11.

1. Asp-Glu-Ala at pH = 2 at pH = 11 Answer

2. Asp-His-Glu at pH = 2 at pH = 11 Answer

3. Leu-Pro-Ser at pH = 2 at pH = 11 Answer

3.Give the detailed structure of Asp-Glu-Ala. Answer

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